STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105901871TAR DNA-binding protein 43-like. (409 aa)    
Predicted Functional Partners:
ENSCHAP00000016427
Parkin RBR E3 ubiquitin protein ligase.
    
 0.961
srsf1
Serine and arginine rich splicing factor 1.
   
 0.956
gsc
Goosecoid homeobox.
    
   0.955
ube2i
Ubiquitin conjugating enzyme E2 I.
   
  0.952
LOC105890774
SUMO-conjugating enzyme UBC9-like.
   
  0.952
ENSCHAP00000015326
EWS RNA-binding protein 1a.
   
 0.931
ENSCHAP00000043344
annotation not available
   
 0.918
LOC105890375
Heterogeneous nuclear ribonucleoprotein K-like.
   
 0.906
ENSCHAP00000054417
Heterogeneous nuclear ribonucleoprotein K.
   
 0.906
ENSCHAP00000027767
TAF15 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.903
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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