STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcGC vitamin D binding protein. (470 aa)    
Predicted Functional Partners:
ttr
Transthyretin.
   
  
 0.902
ENSCHAP00000016980
Fibrinogen beta chain.
   
 
 0.900
ENSCHAP00000018193
Serpin peptidase inhibitor, clade C (antithrombin), member 1.
   
 
 0.884
fgg
Fibrinogen gamma chain.
   
  
 0.875
ENSCHAP00000057954
annotation not available
   
  
 0.864
ENSCHAP00000057957
annotation not available
   
  
 0.864
ENSCHAP00000017116
Fibrinogen alpha chain.
   
  
 0.854
ENSCHAP00000051281
annotation not available
   
 
 0.847
ENSCHAP00000051366
Alpha-1-microglobulin/bikunin precursor.
   
 
 0.847
ENSCHAP00000045791
Cubilin (intrinsic factor-cobalamin receptor).
    
 0.824
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.