STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105897442CXXC-type zinc finger protein 5-like. (283 aa)    
Predicted Functional Partners:
tet1
Tet methylcytosine dioxygenase 1.
     
0.608
ENSCHAP00000062080
Tet methylcytosine dioxygenase 3.
     
0.608
ENSCHAP00000062659
Tet methylcytosine dioxygenase 2.
     
 0.608
ENSCHAP00000001469
Dishevelled segment polarity protein 3a.
    
 0.574
DVL2
Dishevelled segment polarity protein 2.
    
 0.574
dvl1
Dishevelled segment polarity protein 1.
    
 0.574
ENSCHAP00000026255
annotation not available
    
 0.574
ENSCHAP00000026279
annotation not available
    
 0.574
ENSCHAP00000038394
Dishevelled segment polarity protein 2.
    
 0.574
ENSCHAP00000042144
Dishevelled segment polarity protein 3b.
    
 0.574
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.