STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105889129Sarcoplasmic/endoplasmic reticulum calcium ATPase 2. (1042 aa)    
Predicted Functional Partners:
PLN
Phospholamban.
   
 0.966
atp5f1a
methyl-CpG-binding domain protein 2-like.
  
 
 0.790
LOC105913441
Plasma membrane calcium-transporting ATPase 1-like.
  
 
0.682
ENSCHAP00000044329
ATPase plasma membrane Ca2+ transporting 3a.
  
 
0.681
ENSCHAP00000042126
ATPase plasma membrane Ca2+ transporting 2.
  
 
0.680
LOC105897541
Plasma membrane calcium-transporting ATPase 1-like.
  
 
0.680
ENSCHAP00000057325
ATPase plasma membrane Ca2+ transporting 4.
  
 
0.679
ENSCHAP00000034507
ATPase plasma membrane Ca2+ transporting 3b.
  
 
0.678
ENSCHAP00000032050
ATPase copper transporting alpha.
  
0.636
ENSCHAP00000046123
ATPase copper transporting beta.
   
0.636
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.