STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000017512annotation not available (1502 aa)    
Predicted Functional Partners:
ncbp2
Nuclear cap binding protein subunit 2.
    
 0.891
cstf3
Cleavage stimulation factor subunit 3.
   
 0.874
NCBP1
Nuclear cap binding protein subunit 1.
   
 0.861
LOC105903575
pre-mRNA 3'-end-processing factor FIP1-like.
   
 0.850
sf3b1
Splicing factor 3b subunit 1.
   
 0.839
pcf11
PCF11 cleavage and polyadenylation factor subunit.
    
 0.837
snrpd2
Small nuclear ribonucleoprotein D2 polypeptide.
   
 0.836
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.832
ENSCHAP00000022226
Symplekin.
   
 0.832
snrpg
Small nuclear ribonucleoprotein polypeptide G.
   
 0.830
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.