STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CKAP5Cytoskeleton associated protein 5. (1926 aa)    
Predicted Functional Partners:
ENSCHAP00000046868
NDC80 kinetochore complex component.
    
 0.989
ENSCHAP00000050998
SLAIN motif family, member 2.
    
 
 0.948
nuf2
NUF2 component of NDC80 kinetochore complex.
   
 
 0.923
ENSCHAP00000032792
Transforming, acidic coiled-coil containing protein 3.
    
 
 0.917
mad2l1
Mitotic arrest deficient 2 like 1.
   
 0.909
ENSCHAP00000007914
annotation not available
    
 
 0.895
ENSCHAP00000006618
Protein kinase, membrane associated tyrosine/threonine 1.
    
   0.859
ENSCHAP00000025216
WEE1 homolog 2 (S. pombe).
    
   0.859
LOC105895732
Microtubule-associated protein RP/EB family member 3-like.
   
 
 0.838
ENSCHAP00000023391
Microtubule-associated protein, RP/EB family, member 2.
   
 
 0.838
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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