STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105888795Alpha-actinin-2. (914 aa)    
Predicted Functional Partners:
myl1
Myosin light chain 1.
   
 0.881
ENSCHAP00000025947
Vinculin a.
   
 0.863
ENSCHAP00000034955
Vinculin b.
   
 0.863
ENSCHAP00000025941
Membrane associated guanylate kinase, WW and PDZ domain containing 3b.
   
  0.824
ENSCHAP00000041671
annotation not available
   
  0.824
ENSCHAP00000051208
annotation not available
   
  0.824
actb
Actin, cytoplasmic 1.
   
 0.798
ENSCHAP00000047173
Zyxin.
   
 0.782
ENSCHAP00000002250
Myozenin 1a.
   
 
 0.765
ENSCHAP00000060892
Calcium/calmodulin-dependent serine protein kinase a.
   
  0.764
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.