STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
itgb6Integrin subunit beta 6. (784 aa)    
Predicted Functional Partners:
ENSCHAP00000042663
Integrin, alpha 2b.
   
 0.976
ENSCHAP00000009954
Integrin alpha 4.
   
 0.960
LOC105890611
Transforming growth factor beta-1-like.
   
 0.960
ENSCHAP00000035525
Transforming growth factor, beta 1b.
   
 0.960
ITGA7
Integrin subunit alpha 7.
   
 0.958
ENSCHAP00000037603
Talin 1.
   
 0.954
ENSCHAP00000015849
Integrin, alpha 10.
   
 0.951
LOC105890626
filamin-A-like.
    
 0.944
LOC105910408
filamin-C-like.
    
 0.944
tln2
Talin 2.
   
 0.943
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.