STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105897443Transcriptional activator protein Pur-alpha-like. (276 aa)    
Predicted Functional Partners:
YBX2
Y-box binding protein 2.
    
 0.614
ENSCHAP00000000589
Interleukin 11a.
     
 0.604
ENSCHAP00000007807
Fragile X mental retardation, autosomal homolog 2.
    
 0.537
ENSCHAP00000043182
Fragile X mental retardation, autosomal homolog 1.
    
 0.537
lsm14a
LSM14A mRNA processing body assembly factor.
    
  0.503
lsm14b
LSM family member 14B.
    
  0.503
nt5dc3
5'-nucleotidase domain containing 3.
      
 0.467
rfc3
Replication factor C subunit 3.
    
 
 0.455
hnrnpa3
Heterogeneous nuclear ribonucleoprotein A3.
    
 0.449
LOC105904970
THO complex subunit 4-like.
     
 0.438
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.