STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000018434annotation not available (238 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
  0.596
ENSCHAP00000033279
Cytochrome b5 reductase 4.
    
  0.518
lamtor2
Late endosomal/lysosomal adaptor, MAPK and MTOR activator 2.
    
  0.506
ENSCHAP00000062146
BRCA1 associated RING domain 1.
    
  0.504
mrps16
Mitochondrial ribosomal protein S16.
   
  0.501
ENSCHAP00000023606
Coiled-coil-helix-coiled-coil-helix domain containing 1.
    
  0.500
mrps9
Mitochondrial ribosomal protein S9.
    
  0.500
ENSCHAP00000035402
Mitochondrial ribosomal protein S6.
    
  0.500
mrps27
Mitochondrial ribosomal protein S27.
    
  0.500
mysm1
Myb like, SWIRM and MPN domains 1.
    
  0.500
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.