STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000018648SEC63 homolog, protein translocation regulator. (758 aa)    
Predicted Functional Partners:
sec61b
SEC61 translocon beta subunit.
    
 0.999
ENSCHAP00000040412
annotation not available
   
 0.996
ENSCHAP00000040426
SEC62 homolog, preprotein translocation factor.
   
 0.996
SEC61G
Protein transport protein Sec61 subunit gamma-like.
    
 0.993
sec61g
SEC61 translocon gamma subunit.
    
 0.993
snrnp200
Small nuclear ribonucleoprotein U5 subunit 200.
     
0.971
ENSCHAP00000032794
Activating signal cointegrator 1 complex subunit 3.
     
 0.971
ENSCHAP00000000536
Serine threonine kinase 39.
    
 0.964
oxsr1
Oxidative stress responsive kinase 1.
    
 0.964
ENSCHAP00000009456
annotation not available
    
 0.964
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.