STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000019001Villin-like. (874 aa)    
Predicted Functional Partners:
cog8
Component of oligomeric golgi complex 8.
    
 0.868
cog6
Component of oligomeric golgi complex 6.
    
 0.867
ENSCHAP00000060695
Component of oligomeric golgi complex 3.
    
 0.866
smim7
Small integral membrane protein 7.
    
 0.732
cog4
Component of oligomeric golgi complex 4.
    
 0.732
ENSCHAP00000060892
Calcium/calmodulin-dependent serine protein kinase a.
   
  0.688
ENSCHAP00000026217
Myosin IIIA.
     
 0.551
ENSCHAP00000026726
annotation not available
     
 0.551
ENSCHAP00000032432
annotation not available
     
 0.551
ENSCHAP00000054831
Myosin IIIB.
     
 0.551
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.