STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000019092annotation not available (438 aa)    
Predicted Functional Partners:
ENSCHAP00000009999
Pinin, desmosome associated protein.
   
 0.771
ENSCHAP00000011153
Eukaryotic translation initiation factor 4A3.
   
  0.753
LOC105900893
Protein mago nashi homolog.
    
  0.719
srsf1
Serine and arginine rich splicing factor 1.
   
 0.689
tdrd3
Tudor domain containing 3.
    
  0.681
ENSCHAP00000048371
Mediator complex subunit 14.
     
 0.680
ENSCHAP00000026234
Casc3 exon junction complex subunit.
   
  0.672
sap18
Sin3A associated protein 18.
   
  0.666
ENSCHAP00000022671
Mediator complex subunit 24.
    
  0.666
UPF2
UPF2 regulator of nonsense mediated mRNA decay.
    
  0.665
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.