STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000019232Methyltransferase like 6. (288 aa)    
Predicted Functional Partners:
ENSCHAP00000026841
TSR3 ribosome maturation factor.
 
 
  
 0.818
trip12
Thyroid hormone receptor interactor 12.
    
   0.685
rspry1
Ring finger and SPRY domain containing 1.
   
  
 0.543
eaf1
ELL associated factor 1.
      
 0.535
rerg
RAS like estrogen regulated growth inhibitor.
      
 0.531
ENSCHAP00000050345
Protein disulfide isomerase family A, member 5.
      
 0.522
efcab1
EF-hand calcium binding domain 1.
      
 0.520
ENSCHAP00000002042
ADP-ribosylation factor-like 2 binding protein.
   
  
 0.519
gpatch3
G-patch domain containing 3.
      
 0.519
ENSCHAP00000036462
annotation not available
   
    0.515
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.