STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mtfmtMitochondrial methionyl-tRNA formyltransferase. (389 aa)    
Predicted Functional Partners:
ENSCHAP00000040069
Methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2 like.
  
 
 0.978
ENSCHAP00000041970
annotation not available
  
 
 0.978
ENSCHAP00000009497
Thymidylate synthetase.
  
 
 0.974
ENSCHAP00000024533
annotation not available
  
 
 0.954
gart
annotation not available
    
 0.946
ENSCHAP00000050986
Peptide deformylase, mitochondrial.
  
 0.943
dpm1
Dolichyl-phosphate mannosyltransferase subunit 1, catalytic.
  
 
 0.937
ENSCHAP00000054107
5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase.
    
 0.937
alg5
ALG5 dolichyl-phosphate beta-glucosyltransferase.
  
 
 0.937
LOC105908326
C-1-tetrahydrofolate synthase, cytoplasmic-like.
    
 0.934
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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