STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000019625Serine carboxypeptidase 1. (446 aa)    
Predicted Functional Partners:
exosc2
Exosome component 2.
     
 0.706
ENSCHAP00000039664
Neuraminidase 1.
   
 0.685
ENSCHAP00000009344
Galactosidase, beta 1-like.
   
 0.624
ENSCHAP00000032052
Galactosidase, beta 1.
   
 0.624
bod1
Biorientation of chromosomes in cell division 1.
   
 0.619
ENSCHAP00000047827
Si:dkey-224e22.2.
   
 0.619
idh1
Isocitrate dehydrogenase (NADP(+)) 1.
   
 
  0.613
idh2
Isocitrate dehydrogenase (NADP(+)) 2.
   
 
  0.603
chdh
Choline dehydrogenase.
   
 
 0.574
ift46
Intraflagellar transport 46.
   
 
 0.574
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.