STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000019757Prolyl 3-hydroxylase 3. (732 aa)    
Predicted Functional Partners:
p3h4
Prolyl 3-hydroxylase family member 4 (inactive).
  
0.856
crtap
Cartilage associated protein.
   
0.845
ppib
Peptidylprolyl isomerase B.
   
 0.814
ENSCHAP00000042763
Peptidylprolyl isomerase C.
   
 0.758
ENSCHAP00000007951
Prolyl 4-hydroxylase, beta polypeptide.
   
 0.708
ENSCHAP00000031033
annotation not available
   
 0.656
ENSCHAP00000011059
annotation not available
    
 0.639
ENSCHAP00000040789
annotation not available
    
 0.575
ENSCHAP00000056351
Collagen, type VI, alpha 2.
   
 0.566
LOC105912668
Collagen alpha-2(VI) chain-like.
   
 0.566
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.