STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000019780SAGA complex associated factor 29. (293 aa)    
Predicted Functional Partners:
ENSCHAP00000003329
Lysine acetyltransferase 14.
   
 0.999
ENSCHAP00000012123
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.999
supt3h
SPT3 homolog, SAGA and STAGA complex component.
    
 0.999
ENSCHAP00000028179
Zinc finger, ZZ-type containing 3.
    
 0.999
ENSCHAP00000049028
Transformation/transcription domain-associated protein.
    
 0.999
ENSCHAP00000059495
SPT20 homolog, SAGA complex component.
    
 0.999
tada2a
Transcriptional adaptor 2A.
    
 0.999
taf10
TATA-box binding protein associated factor 10.
    
 0.998
ENSCHAP00000001031
YEATS domain containing 2.
   
 0.997
ENSCHAP00000012205
Transcriptional adaptor 2B.
    
 0.997
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.