STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
guf1GUF1 homolog, GTPase. (680 aa)    
Predicted Functional Partners:
mrps9
Mitochondrial ribosomal protein S9.
  
 
 0.971
ENSCHAP00000005646
Ribosomal protein L23.
   
 
 0.970
rps11
Ribosomal protein S11.
   
 
 0.970
mrpl20
Mitochondrial ribosomal protein L20.
  
 
 0.969
ENSCHAP00000035402
Mitochondrial ribosomal protein S6.
  
 
 0.969
rpl11
Ribosomal protein L11.
   
 
 0.968
rps3
Ribosomal protein S3.
   
 
 0.968
rpl9
Ribosomal protein L9.
   
 
 0.968
rps18
Ribosomal protein S18.
    
 
 0.967
mrps16
Mitochondrial ribosomal protein S16.
  
 
 0.953
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.