STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105894478Histone H1-like. (203 aa)    
Predicted Functional Partners:
ENSCHAP00000005035
Replication protein A2.
    
 0.642
stn1
STN1 subunit of CST complex.
    
 0.642
ENSCHAP00000035772
annotation not available
    
 0.642
ENSCHAP00000053724
SAS-6 centriolar assembly protein.
    
 0.642
kpnb1
Karyopherin subunit beta 1.
    
   0.571
ENSCHAP00000061282
annotation not available
     
 0.505
dffb
DNA fragmentation factor subunit beta.
    
 0.445
H2AZ1
Histone H2A.Z.
   
 0.438
LOC105889415
Histone H2A.V.
   
 0.438
LOC105889415-2
Histone H2A.V.
   
 0.438
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.