STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf8Ring finger protein 8. (507 aa)    
Predicted Functional Partners:
ENSCHAP00000030291
Ubiquitin B.
   
 0.978
UBE2N
Ubiquitin conjugating enzyme E2 N.
  
 0.977
ube2n
Ubiquitin conjugating enzyme E2 N.
  
 0.977
rps27a
Ribosomal protein S27a.
   
 0.973
ENSCHAP00000030857
annotation not available
    
  0.965
ENSCHAP00000000456
annotation not available
   
 0.964
ENSCHAP00000007350
annotation not available
    
 0.945
ENSCHAP00000020088
Striatin interacting protein 1.
    
 0.945
ENSCHAP00000027876
Mediator of DNA damage checkpoint 1.
    
 0.932
ENSCHAP00000037425
Tumor protein p53 binding protein, 1.
    
 0.928
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.