STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000020833Si:ch73-22a13.3. (299 aa)    
Predicted Functional Partners:
ENSCHAP00000050149
Phospholipase C, gamma 1.
     
 0.851
ENSCHAP00000009032
Phospholipase C, beta 3 (phosphatidylinositol-specific).
     
 0.850
PLCB2
Phospholipase C beta 2.
     
 0.844
ENSCHAP00000016316
Inositol-trisphosphate 3-kinase Cb.
  
  
 
0.830
LOC105904468
Inositol-trisphosphate 3-kinase C-like.
  
  
 
0.830
itpka
Inositol-trisphosphate 3-kinase A.
  
  
 
0.830
ENSCHAP00000029531
Inositol polyphosphate-5-phosphatase L.
     
 0.820
ENSCHAP00000049450
annotation not available
     
 0.743
ENSCHAP00000049881
Phospholipase C, gamma 2.
     
 0.743
ENSCHAP00000009232
Phospholipase C beta 1.
     
 0.740
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.