STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000020917glutamyl-tRNA synthetase 2, mitochondrial. (567 aa)    
Predicted Functional Partners:
ENSCHAP00000008683
FAU ubiquitin like and ribosomal protein S30 fusion a.
   
 0.999
mars1
methionyl-tRNA synthetase 1.
  
 0.998
rpl29
Ribosomal protein L29.
   
 0.994
rpl23a
Ribosomal protein L23a.
  
 0.994
ENSCHAP00000023537
Ribosomal protein L38.
   
 0.993
rpl9
Ribosomal protein L9.
  
 0.993
ENSCHAP00000041531
Ribosomal protein L36A.
   
 0.992
rpl31
Ribosomal protein L31.
   
 0.992
ENSCHAP00000051592
Ribosomal protein L24.
  
 0.992
ENSCHAP00000000418
Ribosomal protein S21.
   
 0.991
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.