STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000021591Si:ch1073-174d20.2. (792 aa)    
Predicted Functional Partners:
phb
Prohibitin.
  
 0.941
PHB2
Prohibitin 2.
  
 0.907
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
   
 
 0.892
timmdc1
Translocase of inner mitochondrial membrane domain containing 1.
    
   0.889
mrpl2
Mitochondrial ribosomal protein L2.
  
 
 0.886
mrpl13
Mitochondrial ribosomal protein L13.
  
 
 0.872
ENSCHAP00000046381
Mitochondrial ribosomal protein L27.
  
 
 0.872
mrpl19
Mitochondrial ribosomal protein L19.
  
 
 0.871
spg7
SPG7 matrix AAA peptidase subunit, paraplegin.
  
 
0.866
mrps11
Mitochondrial ribosomal protein S11.
   
 
 0.864
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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