STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000021681Immunoglobulin like and fibronectin type III domain containing 1, tandem duplicate 4. (1117 aa)    
Predicted Functional Partners:
ENSCHAP00000056195
WD repeat domain 18.
   
 0.743
ENSCHAP00000006597
Pescadillo.
   
 0.697
tex10
Testis expressed 10.
   
 0.689
mylpf
Myosin light chain, phosphorylatable, fast skeletal muscle.
   
 0.648
LOC105894777
Myosin regulatory light chain 2, smooth muscle minor isoform.
   
 0.603
ENSCHAP00000031330
Rhomboid, veinlet-like 3 (Drosophila).
    
  0.599
RHBDL3
Rhomboid like 3.
    
  0.599
CALML6
Calmodulin like 6.
    
 0.599
ENSCHAP00000044122
Calmodulin-like 4b.
    
 0.598
myl1
Myosin light chain 1.
   
 0.598
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.