STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000021736Kinase D-interacting substrate 220a. (1737 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.734
LOC105900866
Xenotropic and polytropic retrovirus receptor 1 homolog.
   
 0.702
crk
CRK proto-oncogene, adaptor protein.
    
 0.681
ENSCHAP00000039104
annotation not available
    
 0.681
crkl
CRK like proto-oncogene, adaptor protein.
    
 0.673
ENSCHAP00000006817
annotation not available
   
  0.648
ENSCHAP00000026367
Rho family GTPase 2.
   
  0.648
ift81
Intraflagellar transport 81.
    
 0.648
rap1b
RAP1B, member of RAS oncogene family.
   
  0.634
LOC105901888
Ras-related protein Rap-1A-like.
   
  0.634
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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