STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lrrc47Leucine rich repeat containing 47. (565 aa)    
Predicted Functional Partners:
farsa
phenylalanyl-tRNA synthetase subunit alpha.
  
 0.999
fdxacb1
Ferredoxin-fold anticodon binding domain containing 1.
  
 0.998
ENSCHAP00000007543
phenylalanyl-tRNA synthetase 2, mitochondrial.
  
 0.995
ENSCHAP00000026988
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.977
ENSCHAP00000010187
annotation not available
  
  
 0.966
rps11
Ribosomal protein S11.
  
 
 0.951
rps3
Ribosomal protein S3.
  
 
 0.951
rps13
Ribosomal protein S13.
  
 
 0.940
riok1
RIO kinase 1.
    
 
 0.937
iars1
isoleucyl-tRNA synthetase 1.
  
 
 0.931
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.