STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000022018TSEN34 tRNA splicing endonuclease subunit. (325 aa)    
Predicted Functional Partners:
ENSCHAP00000032656
TSEN2 tRNA splicing endonuclease subunit.
    
 0.997
tsen15
tRNA splicing endonuclease subunit 15.
    
 0.988
ENSCHAP00000007949
annotation not available
   
 0.985
clp1
Cleavage and polyadenylation factor I subunit 1.
    
 0.974
pop4
POP4 homolog, ribonuclease P/MRP subunit.
     
 0.937
kri1
KRI1 homolog.
   
 
  0.935
rpp30
Ribonuclease P/MRP subunit p30.
   
 
  0.931
POP1
POP1 homolog, ribonuclease P/MRP subunit.
     
 0.930
DXO
Decapping exoribonuclease.
   
 
  0.926
ENSCHAP00000040820
Drosha ribonuclease III.
   
 
  0.926
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.