STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNDIG1Synapse differentiation inducing 1. (352 aa)    
Predicted Functional Partners:
ENSCHAP00000027595
Gsg1-like 2a.
      
 0.521
ENSCHAP00000030721
annotation not available
      
 0.521
ENSCHAP00000001372
Trafficking regulator of GLUT4 (SLC2A4) 1a.
      
 0.459
ENSCHAP00000008192
Transmembrane protein 108.
      
 0.447
ENSCHAP00000013157
Cornichon family AMPA receptor auxiliary protein 1.
      
 0.445
ENSCHAP00000004809
Shisa family member 3.
      
 0.431
cnih2
Cornichon family AMPA receptor auxiliary protein 2.
      
 0.430
ENSCHAP00000000715
annotation not available
      
 0.426
ENSCHAP00000004955
Cornichon family AMPA receptor auxiliary protein 3.
      
 0.420
LOC105888775
Germ cell-specific gene 1-like protein.
      
 0.400
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.