STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000022678annotation not available (149 aa)    
Predicted Functional Partners:
ENSCHAP00000018538
Dystroglycan 1.
   
 0.735
ENSCHAP00000018864
Nidogen 1a.
   
 0.509
ENSCHAP00000041584
Nidogen 1b.
   
 0.509
ENSCHAP00000053126
Nidogen 2a (osteonidogen).
   
 0.509
ENSCHAP00000054324
Sortilin-related receptor, L(DLR class) A repeats containing.
    
 0.504
PGF
Placental growth factor.
     
 0.500
ENSCHAP00000015478
Vascular endothelial growth factor Aa.
     
 0.500
ENSCHAP00000005679
annotation not available
   
 0.492
LOC105900756
Low-density lipoprotein receptor class A domain-containing protein 3-like.
   
 0.492
ENSCHAP00000033002
annotation not available
     
 0.491
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.