ENSCHAP00000022762 protein (Clupea harengus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

ENSCHAP00000022762

annotation not available (132 aa)

Predicted Functional Partners:

ENSCHAP00000000317

0.949

ENSCHAP00000055348

0.947

ENSCHAP00000003979

0.913

ENSCHAP00000002543

0.910

ENSCHAP00000027391

0.879

ENSCHAP00000016404

0.875

LOC105889199

0.874

ENSCHAP00000039511

0.874

ENSCHAP00000039573

0.874

ENSCHAP00000022148

0.864

Your Current Organism:

Clupea harengus

NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSCHAP00000000317	ENSCHAP00000002543	ENSCHAP00000000317	ENSCHAP00000002543	annotation not available	annotation not available	0.820
ENSCHAP00000000317	ENSCHAP00000003979	ENSCHAP00000000317	ENSCHAP00000003979	annotation not available	Tubulin, alpha 8 like.	0.875
ENSCHAP00000000317	ENSCHAP00000016404	ENSCHAP00000000317	ENSCHAP00000016404	annotation not available	annotation not available	0.820
ENSCHAP00000000317	ENSCHAP00000022148	ENSCHAP00000000317	ENSCHAP00000022148	annotation not available	annotation not available	0.820
ENSCHAP00000000317	ENSCHAP00000022762	ENSCHAP00000000317	ENSCHAP00000022762	annotation not available	annotation not available	0.949
ENSCHAP00000000317	ENSCHAP00000027391	ENSCHAP00000000317	ENSCHAP00000027391	annotation not available	WD repeat domain 90.	0.879
ENSCHAP00000000317	ENSCHAP00000039511	ENSCHAP00000000317	ENSCHAP00000039511	annotation not available	annotation not available	0.820
ENSCHAP00000000317	ENSCHAP00000039573	ENSCHAP00000000317	ENSCHAP00000039573	annotation not available	Tubulin, alpha 1a.	0.820
ENSCHAP00000000317	LOC105889199	ENSCHAP00000000317	ENSCHAP00000029930	annotation not available	Tubulin alpha chain, testis-specific.	0.820
ENSCHAP00000002543	ENSCHAP00000000317	ENSCHAP00000002543	ENSCHAP00000000317	annotation not available	annotation not available	0.820
ENSCHAP00000002543	ENSCHAP00000022762	ENSCHAP00000002543	ENSCHAP00000022762	annotation not available	annotation not available	0.910
ENSCHAP00000002543	ENSCHAP00000027391	ENSCHAP00000002543	ENSCHAP00000027391	annotation not available	WD repeat domain 90.	0.863
ENSCHAP00000002543	ENSCHAP00000055348	ENSCHAP00000002543	ENSCHAP00000055348	annotation not available	annotation not available	0.902
ENSCHAP00000003979	ENSCHAP00000000317	ENSCHAP00000003979	ENSCHAP00000000317	Tubulin, alpha 8 like.	annotation not available	0.875
ENSCHAP00000003979	ENSCHAP00000022762	ENSCHAP00000003979	ENSCHAP00000022762	Tubulin, alpha 8 like.	annotation not available	0.913
ENSCHAP00000003979	ENSCHAP00000027391	ENSCHAP00000003979	ENSCHAP00000027391	Tubulin, alpha 8 like.	WD repeat domain 90.	0.863
ENSCHAP00000003979	ENSCHAP00000055348	ENSCHAP00000003979	ENSCHAP00000055348	Tubulin, alpha 8 like.	annotation not available	0.917
ENSCHAP00000016404	ENSCHAP00000000317	ENSCHAP00000016404	ENSCHAP00000000317	annotation not available	annotation not available	0.820
ENSCHAP00000016404	ENSCHAP00000022762	ENSCHAP00000016404	ENSCHAP00000022762	annotation not available	annotation not available	0.875
ENSCHAP00000016404	ENSCHAP00000027391	ENSCHAP00000016404	ENSCHAP00000027391	annotation not available	WD repeat domain 90.	0.863