STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105899436Galactocerebrosidase-like. (668 aa)    
Predicted Functional Partners:
ENSCHAP00000015792
Arylsulfatase A.
     
 0.906
LOC105911479
Acid ceramidase-like.
     
 0.896
asah1
N-acylsphingosine amidohydrolase 1.
     
 0.896
psap
Prosaposin.
    
 
 0.888
ENSCHAP00000017562
Glucosidase, beta, acid.
     
 0.886
gba2
Glucosylceramidase beta 2.
     
 0.885
ugt8
UDP glycosyltransferase 8.
     
 0.876
ENSCHAP00000006645
galactose-3-O-sulfotransferase 1a.
     
 0.872
acer1
Alkaline ceramidase 1.
     
 0.871
ENSCHAP00000051462
UDP-glucose ceramide glucosyltransferase.
     
 0.871
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.