STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000022906Transcription elongation factor A (SII), 3. (675 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.988
gtf2b
General transcription factor IIB.
   
 0.979
ENSCHAP00000006037
Polymerase (RNA) II (DNA directed) polypeptide J.
   
 0.977
ENSCHAP00000035435
Polymerase (RNA) II (DNA directed) polypeptide C.
   
 0.977
polr2b
RNA polymerase II subunit B.
   
 0.977
polr2i
RNA polymerase II subunit I.
   
 0.976
polr2f
RNA polymerase II subunit F.
   
 0.976
polr2k
RNA polymerase II subunit K.
  
 0.976
ENSCHAP00000037044
Polymerase (RNA) II (DNA directed) polypeptide D.
   
 0.976
polr2l
RNA polymerase II subunit L.
   
 0.971
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.