STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pwp1PWP1 homolog, endonuclein. (490 aa)    
Predicted Functional Partners:
rpf2
Ribosome production factor 2 homolog.
   
 
 0.979
rbm34
RNA binding motif protein 34.
   
 
 0.979
ENSCHAP00000051880
EBNA1 binding protein 2.
   
 
 0.973
ENSCHAP00000011215
Glutamate-rich WD repeat containing 1.
   
  
0.968
ENSCHAP00000008125
GTP binding protein 4.
   
 
 0.967
noc2l
NOC2 like nucleolar associated transcriptional repressor.
   
 
 0.964
wdr3
WD repeat domain 3.
   
  
 0.959
sdad1
SDA1 domain containing 1.
   
  
 0.954
pdcd11
Programmed cell death 11.
   
 
 0.952
ENSCHAP00000006597
Pescadillo.
   
 
 0.950
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.