STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000023295DM1 locus, WD repeat containing. (564 aa)    
Predicted Functional Partners:
ENSCHAP00000055233
Ubiquitin specific peptidase 46.
   
 0.953
ENSCHAP00000059137
Ubiquitin specific peptidase 12b.
   
 0.953
wdr48
WD repeat domain 48.
    
 0.951
ENSCHAP00000034287
WD repeat domain 48b.
    
 0.951
ENSCHAP00000003002
Ubiquitin specific peptidase 38.
    
 0.892
ENSCHAP00000043536
Ubiquitin specific peptidase 1.
    
 0.892
ENSCHAP00000022226
Symplekin.
 
  
 0.858
mad2l1
Mitotic arrest deficient 2 like 1.
   
 0.813
tex10
Testis expressed 10.
   
 0.799
ENSCHAP00000012123
TAF12 RNA polymerase II, TATA box binding protein (TBP)-associated factor.
   
 0.799
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.