STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000023393annotation not available (255 aa)    
Predicted Functional Partners:
ENSCHAP00000000914
Stem-loop binding protein.
   
 0.866
ENSCHAP00000026626
annotation not available
   
 0.866
lsm11
LSM11, U7 small nuclear RNA associated.
     
 0.663
exosc5
Exosome component 5.
   
 0.648
ENSCHAP00000046655
Dicer 1, ribonuclease type III.
    
 
 0.636
ENSCHAP00000001778
Exosome component 6.
   
 0.632
exosc4
Exosome component 4.
   
 0.632
ENSCHAP00000023537
Ribosomal protein L38.
     
 0.629
tex10
Testis expressed 10.
   
 
  0.593
ENSCHAP00000052115
Nucleolar protein 9.
     
 0.585
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.