STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000023439HECT domain containing 1. (2235 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
  
0.907
ENSCHAP00000056485
Ubiquitin protein ligase E3 component n-recognin 3.
   
  
 0.822
UBA3
Ubiquitin like modifier activating enzyme 3.
     
 0.689
LOC105912256
NEDD8-activating enzyme E1 catalytic subunit.
     
 0.689
ubr4
Ubiquitin protein ligase E3 component n-recognin 4.
   
  
 0.657
ENSCHAP00000062823
Baculoviral IAP repeat containing 6.
   
 
 0.633
ENSCHAP00000030857
annotation not available
    
  0.609
ENSCHAP00000055053
Ubiquitin specific peptidase 9.
   
   0.594
USP24
Ubiquitin specific peptidase 24.
   
   0.588
USP34
Ubiquitin specific peptidase 34.
   
    0.582
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.