STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hoxb7Homeobox B7. (229 aa)    
Predicted Functional Partners:
hoxb6
Homeobox B6.
  
 
0.977
ENSCHAP00000030996
Homeobox B6b.
   
 
0.975
LOC105912855
Homeobox protein Hox-B5a.
   
 
0.965
LOC105888810
Homeobox protein Hox-B5b-like.
   
 
0.950
ENSCHAP00000059911
Homeobox C6a.
   
 
0.900
hoxd4
Homeobox D4.
   
 
0.871
hoxb4
Homeobox B4.
  
 
0.849
LOC105908118
Homeobox protein Hox-C4a-like.
   
 
0.836
LOC105908127
Homeobox protein Hox-C5-like.
   
   0.787
NR5A1
Nuclear receptor subfamily 5 group A member 1.
    
 0.772
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.