STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000024305TNFAIP3 interacting protein 1. (658 aa)    
Predicted Functional Partners:
tnfaip3
TNF alpha induced protein 3.
   
 0.989
ENSCHAP00000023227
Tumor necrosis factor receptor superfamily, member 1a.
    
 
 0.957
ENSCHAP00000030291
Ubiquitin B.
    
   0.928
LOC105894130
NF-kappa-B essential modulator-like.
    
 0.851
ENSCHAP00000002374
Zinc finger, RAN-binding domain containing 1b.
    
 0.816
otud7b
OTU deubiquitinase 7B.
    
 0.816
ENSCHAP00000027680
OTU deubiquitinase 7A.
    
 0.816
ENSCHAP00000054076
Valosin containing protein (p97)/p47 complex interacting protein 1.
    
 0.816
ENSCHAP00000056785
annotation not available
    
 0.816
ENSCHAP00000000306
Pleckstrin homology domain containing, family G (with RhoGef domain) member 5b.
    
   0.692
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.