STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105908822U2 small nuclear ribonucleoprotein A'-like. (187 aa)    
Predicted Functional Partners:
gart
annotation not available
  
 
 0.919
aldh18a1
Aldehyde dehydrogenase 18 family member A1.
  
 
 0.914
ENSCHAP00000010007
Aldehyde dehydrogenase 18 family, member A1.
  
 
 0.914
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
  0.911
ENSCHAP00000026988
glutamyl-prolyl-tRNA synthetase 1.
  
 
 0.903
asmtl
Acetylserotonin O-methyltransferase like.
  
 
 0.902
ephx2
Epoxide hydrolase 2.
  
 
 0.887
hsdl2
Hydroxysteroid dehydrogenase like 2.
  
 0.812
ENSCHAP00000054064
annotation not available
  
 0.796
helb
DNA helicase B.
  
 0.795
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.