STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gask1bGolgi associated kinase 1B. (523 aa)    
Predicted Functional Partners:
ENSCHAP00000021246
Translocase of outer mitochondrial membrane 20.
      
 0.538
ENSCHAP00000030862
AT rich interactive domain 4A (RBP1-like).
      
 0.538
ENSCHAP00000000706
Spalt-like transcription factor 4.
      
 0.537
ENSCHAP00000017836
Interferon regulatory factor 3.
      
 0.526
ENSCHAP00000044241
Iroquois homeobox 3a.
      
 0.523
ENSCHAP00000019356
Usher syndrome 2A (autosomal recessive, mild).
    
 
 0.450
ENSCHAP00000035733
Usher syndrome 1C.
      
 0.431
stox1
Storkhead box 1.
      
 0.422
ENSCHAP00000000446
Syntaphilin b.
      
 0.405
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.