STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC105899978Protein rogdi homolog. (300 aa)    
Predicted Functional Partners:
DMXL1
Dmx like 1.
    
 0.990
ENSCHAP00000061292
Dmx-like 2.
    
 0.990
SKP1
S-phase kinase-associated protein 1-like.
    
 0.955
ENSCHAP00000052411
S-phase kinase-associated protein 1.
    
 0.955
ENSCHAP00000051526
ATPase, H+ transporting, lysosomal, V1 subunit B, member a.
   
 
 0.824
ENSCHAP00000060460
ATPase H+ transporting V1 subunit B2.
   
 
 0.824
ENSCHAP00000025718
Glyoxylate reductase 1 homolog (Arabidopsis).
 
      0.656
WDR7
WD repeat domain 7.
    
 
 0.604
ENSCHAP00000031976
annotation not available
    
 
 0.604
ENSCHAP00000031956
annotation not available
    
 
 0.565
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.