STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
UBR1Ubiquitin protein ligase E3 component n-recognin 1. (1667 aa)    
Predicted Functional Partners:
trip12
Thyroid hormone receptor interactor 12.
   
 0.996
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
  0.936
LOC105913296
Ubiquitin-conjugating enzyme E2 A-like.
    
 0.911
ube2a
Ubiquitin conjugating enzyme E2 A.
    
 0.911
ube2b
Ubiquitin conjugating enzyme E2 B.
    
 0.911
ENSCHAP00000030291
Ubiquitin B.
   
 0.895
ENSCHAP00000005506
annotation not available
    
 0.868
rps27a
Ribosomal protein S27a.
   
 0.865
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
     
 0.805
ENSCHAP00000030857
annotation not available
    
 0.757
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.