STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PABPC3poly(A) binding protein cytoplasmic 3. (640 aa)    
Predicted Functional Partners:
ENSCHAP00000033888
poly(A) specific ribonuclease subunit PAN3.
    
 0.966
pan2
poly(A) specific ribonuclease subunit PAN2.
    
 0.965
LOC105895537
Eukaryotic initiation factor 4A-I-like.
 
 
 0.946
eif4a2
Eukaryotic translation initiation factor 4A2.
 
 
 0.946
paip1
poly(A) binding protein interacting protein 1.
   
 0.934
ncbp2
Nuclear cap binding protein subunit 2.
   
 0.934
NCBP1
Nuclear cap binding protein subunit 1.
    
 0.905
lsm1
LSM1 homolog, mRNA degradation associated.
    
 0.886
eftud2
Elongation factor Tu GTP binding domain containing 2.
   
 0.881
ENSCHAP00000005173
annotation not available
   
 0.878
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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