STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000025164Death effector domain-containing 1. (377 aa)    
Predicted Functional Partners:
ENSCHAP00000000357
Cms1 ribosomal small subunit homolog.
      
 0.523
ENSCHAP00000043486
annotation not available
    
 
 0.446
LOC105896625
CASP8 and FADD-like apoptosis regulator.
    
 
 0.446
ENSCHAP00000015367
Spliceosome associated factor 1, recruiter of U4/U6.U5 tri-snRNP.
   
  
 0.415
znhit2
Zinc finger HIT-type containing 2.
      
 0.400
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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