STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000025175annotation not available (128 aa)    
Predicted Functional Partners:
tbp
TATA-box binding protein.
   
 0.820
ENSCHAP00000031975
TATA box binding protein like 2.
   
 0.820
ENSCHAP00000031093
RRN3 homolog, RNA polymerase I transcription factor.
    
 0.763
mnat1
MNAT1 component of CDK activating kinase.
    
 0.752
ENSCHAP00000019780
SAGA complex associated factor 29.
   
 
  0.750
tbpl1
TATA-box binding protein like 1.
   
 0.736
cdk20
Cyclin dependent kinase 20.
    
 0.722
ENSCHAP00000051071
Cyclin-dependent kinase 7.
    
 0.722
ENSCHAP00000005390
General transcription factor IIH, polypeptide 5.
   
  0.718
polr1a
RNA polymerase I subunit A.
   
 0.702
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.