STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
snx17Sorting nexin 17. (477 aa)    
Predicted Functional Partners:
krit1
KRIT1 ankyrin repeat containing.
    
 
 0.955
vps29
VPS29 retromer complex component.
    
 0.906
vps26a
VPS26, retromer complex component A.
   
 0.902
vps26b
VPS26, retromer complex component B.
   
 0.902
snx5
Sorting nexin 5.
    
 0.853
ENSCHAP00000027356
WASH complex subunit 3.
    
 0.850
washc5
WASH complex subunit 5.
    
 0.844
DNAJC13
DnaJ heat shock protein family (Hsp40) member C13.
   
 0.834
ENSCHAP00000041905
WAS protein family homolog 1.
    
 0.834
ENSCHAP00000045209
WASH complex subunit 4.
    
 0.834
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.