STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000025598Deltex 4, E3 ubiquitin ligase a. (800 aa)    
Predicted Functional Partners:
ENSCHAP00000054630
Notch receptor 2.
    
 0.908
notch1
Notch receptor 1.
    
 0.906
ENSCHAP00000062382
annotation not available
    
 0.906
ENSCHAP00000047167
Notch receptor 3.
    
 0.899
LOC105901090
E3 ubiquitin-protein ligase DTX3L-like.
  
 
0.833
ENSCHAP00000034116
WW domain containing E3 ubiquitin protein ligase 2.
    
 0.826
ENSCHAP00000045566
WW domain containing E3 ubiquitin protein ligase 1.
    
 0.826
ENSCHAP00000052732
Itchy E3 ubiquitin protein ligase a.
    
 0.826
rps27a
Ribosomal protein S27a.
    
  0.767
ENSCHAP00000030291
Ubiquitin B.
    
 0.730
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.