STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSCHAP00000025711Si:ch211-278j3.3. (644 aa)    
Predicted Functional Partners:
ENSCHAP00000030857
annotation not available
    
  0.789
rps27a
Ribosomal protein S27a.
    
 0.787
trip12
Thyroid hormone receptor interactor 12.
   
 
 0.723
ENSCHAP00000062823
Baculoviral IAP repeat containing 6.
    
 0.714
LOC105900785
Ubiquitin-conjugating enzyme E2 variant 3-like.
   
 0.661
ENSCHAP00000045730
Zinc finger, AN1-type domain 4.
   
 0.637
rnf7
Ring finger protein 7.
    
 0.628
ENSCHAP00000004468
Cullin 2.
    
 0.617
LOC105894130
NF-kappa-B essential modulator-like.
    
 0.617
rbx1
Ring-box 1.
    
 0.608
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.