STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RIC1RIC1 homolog, RAB6A GEF complex partner 1. (1419 aa)    
Predicted Functional Partners:
rgp1
RGP1 homolog, RAB6A GEF complex partner 1.
    
 0.999
ENSCHAP00000042908
RAB6B, member RAS oncogene family a.
    
 0.939
ENSCHAP00000045707
RAB41, member RAS oncogene family.
    
 0.939
ENSCHAP00000046760
annotation not available
    
 0.939
cog8
Component of oligomeric golgi complex 8.
   
 0.933
ENSCHAP00000027573
RAB36, member RAS oncogene family.
    
 0.895
ENSCHAP00000036510
RAB34, member RAS oncogene family a.
    
 0.895
ENSCHAP00000040776
annotation not available
    
 0.895
arfrp1
ADP ribosylation factor related protein 1.
    
 0.868
cog6
Component of oligomeric golgi complex 6.
    
 0.866
Your Current Organism:
Clupea harengus
NCBI taxonomy Id: 7950
Other names: Atlantic herring, C. harengus, Clupea harengus harengus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.